Dear Jason,
Thank you for the respond.
PYTHONPATH was properly stated.
I'll try to re-install Parmed via Conda.
And Finally, Parmed running well.
Thanks.
Pada tanggal 4 Des 2017 11.43 AM, "Jason Swails" <jason.swails.gmail.com>
menulis:
> Make sure you source $AMBERHOME/amber.sh before running parmed.
>
> It looks like PYTHONPATH is not properly set for parmed to work.
>
> HTH,
> Jason
>
> On Thu, Nov 30, 2017 at 6:12 PM, Setyanto Md <stwahyudi.md.gmail.com>
> wrote:
>
> > Dear Amber User and Developer,
> >
> > I'am trying to follow tutorial in :
> > http://ambermd.org/tutorials/advanced/tutorial20/12_6.htm
> >
> > In step 3 : 3. Check the topology files:
> >
> > I run : parmed -i 126_parmed.in -p Zn_4V2Y.prmtop
> >
> > Unfortunately, there is error message:
> > ====
> > Traceback (most recent call last):
> > File "/home/stwahyudi/software/instalasi-amber/amber16/bin/parmed",
> line
> > 5, in <module>
> > from parmed.scripts import clapp
> > ImportError: No module named parmed.scripts
> > ====
> >
> > I try to find solution and found Amber16 installation error thread by
> > Abhilash J, but it was about Installation.
> > My Amber 16 installation was oke.
> >
> > And I also found: https://github.com/ParmEd/ParmEd/issues/181
> > But I don't understand.
> >
> > I hope somebody can give me any suggestion.
> >
> > Thanks
> >
> > Regards
> >
> > Setyanto Tri Wahyudi
> > Dep.of Physics -
> > Bogor Agricultural University
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Dec 04 2017 - 07:00:03 PST
