Make sure you source $AMBERHOME/amber.sh before running parmed.
It looks like PYTHONPATH is not properly set for parmed to work.
HTH,
Jason
On Thu, Nov 30, 2017 at 6:12 PM, Setyanto Md <stwahyudi.md.gmail.com> wrote:
> Dear Amber User and Developer,
>
> I'am trying to follow tutorial in :
> http://ambermd.org/tutorials/advanced/tutorial20/12_6.htm
>
> In step 3 : 3. Check the topology files:
>
> I run : parmed -i 126_parmed.in -p Zn_4V2Y.prmtop
>
> Unfortunately, there is error message:
> ====
> Traceback (most recent call last):
> File "/home/stwahyudi/software/instalasi-amber/amber16/bin/parmed", line
> 5, in <module>
> from parmed.scripts import clapp
> ImportError: No module named parmed.scripts
> ====
>
> I try to find solution and found Amber16 installation error thread by
> Abhilash J, but it was about Installation.
> My Amber 16 installation was oke.
>
> And I also found: https://github.com/ParmEd/ParmEd/issues/181
> But I don't understand.
>
> I hope somebody can give me any suggestion.
>
> Thanks
>
> Regards
>
> Setyanto Tri Wahyudi
> Dep.of Physics -
> Bogor Agricultural University
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>
--
Jason M. Swails
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Received on Sun Dec 03 2017 - 21:00:02 PST
