[AMBER] helix broken during minimization step

From: Rana Rehan Khalid <rrkhalid.umich.edu>
Date: Mon, 4 Dec 2017 19:52:34 +0500

Dear Amber users

I model the hetrodimer structure and after that I ran its simulation but
during minimization I observed that some helix broken down or convert to
loop. I am also attaching the images first ------ before minimization
second ----------after minimization steps 5000 step.

Kindly guide me is it fine or there is problem in the structure.

Kind Regards

AMBER mailing list

(image/png attachment: first.png)

(image/png attachment: second.png)

Received on Mon Dec 04 2017 - 07:00:04 PST
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