i delete amber 16 then install and it ends with this is it fine
make[2]: Leaving directory '/home/rehan/Downloads/amber16/AmberTools/src'
Installation of AmberTools17 serial is complete at Thu Jul 6 03:16:30 EDT
2017.
make[1]: Leaving directory '/home/rehan/Downloads/amber16/AmberTools/src'
==============================================================
/home/rehan/Downloads/amber16/src/Makefile not found, or -noamber was set.
This is expected if you do not have Amber16.
On Thu, Jul 6, 2017 at 2:50 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> I would delete everything and start over.
>
> Bill
>
>
> On 7/5/17 11:41 PM, Rana Rehan Khalid wrote:
> > i follow the amber tutorial 2017 for installation i also have amber 16
> > install and on the same directory i extract the amber 17 which i think
> > extract on the same amber 16 directory configure gnu on ubuntu 16.1
> >
> > On Thu, Jul 6, 2017 at 2:37 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> >
> >> What configure instructions did you use? On what operating system?
> >>
> >> Bill
> >>
> >>
> >> On 7/5/17 11:35 PM, Rana Rehan Khalid wrote:
> >>> nergy_Sander.cpp: In member function ‘void
> >>> Energy_Sander::SetDefaultInput()’:
> >>> Energy_Sander.cpp:128:10: error: ‘struct sander_input’ has no member
> >> named
> >>> ‘ibelly’
> >>> input_.ibelly = 0;
> >>> ^
> >>> Energy_Sander.cpp:131:10: error: ‘struct sander_input’ has no member
> >> named
> >>> ‘bellymask’
> >>> input_.bellymask[0] = '\0';
> >>> ^
> >>> Energy_Sander.cpp:132:10: error: ‘struct sander_input’ has no member
> >> named
> >>> ‘refc’
> >>> input_.refc[0] = '\0';
> >>> ^
> >>> <builtin>: recipe for target 'Energy_Sander.o' failed
> >>> make[4]: *** [Energy_Sander.o] Error 1
> >>> make[4]: Leaving directory
> >>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj/src'
> >>> Makefile:10: recipe for target 'install' failed
> >>> make[3]: *** [install] Error 2
> >>> make[3]: Leaving directory
> >>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj'
> >>> Makefile:482: recipe for target 'build_cpptraj' failed
> >>> make[2]: *** [build_cpptraj] Error 2
> >>> make[2]: Leaving directory '/home/rehan/Downloads/
> >> amber16/AmberTools/src'
> >>> Makefile:17: recipe for target 'serial' failed
> >>> make[1]: *** [serial] Error 2
> >>> make[1]: Leaving directory '/home/rehan/Downloads/
> >> amber16/AmberTools/src'
> >>> Makefile:7: recipe for target 'install' failed
> >>> make: *** [install] Error 2
> >>>
> >>> On Thu, Jul 6, 2017 at 2:33 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
> >>>
> >>>> Look at test output for problems, rather than compile warnings.
> >>>>
> >>>> Bill
> >>>>
> >>>>
> >>>> On 7/5/17 11:31 PM, Rana Rehan Khalid wrote:
> >>>>> is the warning messages during installation common or there is some
> >>>> problem
> >>>>> in installation ??
> >>>>>
> >>>>> On Thu, Jul 6, 2017 at 1:34 AM, Hai Nguyen <nhai.qn.gmail.com>
> wrote:
> >>>>>
> >>>>>> Have you read the amber 17 manual about install yet? If yes, which
> >> part
> >>>> you
> >>>>>> are not clear?
> >>>>>>
> >>>>>> Hai
> >>>>>>
> >>>>>> On Thu, Jul 6, 2017 at 1:22 AM Rana Rehan Khalid <
> rrkhalid.umich.edu>
> >>>>>> wrote:
> >>>>>>
> >>>>>>> is it better i delete the first one and install new one??
> >>>>>>>
> >>>>>>>
> >>>>>>> On Thu, Jul 6, 2017 at 1:11 AM, Bill Ross <ross.cgl.ucsf.edu>
> wrote:
> >>>>>>>
> >>>>>>>> Install side-by-side, unless you want to debug deeply, is my
> >>>>>> suggestion.
> >>>>>>>> Bill
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> On 7/5/17 10:09 PM, Rana Rehan Khalid wrote:
> >>>>>>>>> I already Have Amber 16 but now i want to install amber 17 over
> it
> >>>>>>> kindly
> >>>>>>>>> guide me i download the amber 17
> >>>>>>>>>
> >>>>>>>>> i also try to update the amber 16 but may be some file missing
> >> after
> >>>>>>>> update
> >>>>>>>>> kindly guide me thanks
> >>>>>>>>> _______________________________________________
> >>>>>>>>> AMBER mailing list
> >>>>>>>>> AMBER.ambermd.org
> >>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>>>>>> _______________________________________________
> >>>>>>>> AMBER mailing list
> >>>>>>>> AMBER.ambermd.org
> >>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>>>>>>
> >>>>>>> _______________________________________________
> >>>>>>> AMBER mailing list
> >>>>>>> AMBER.ambermd.org
> >>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>>>>>
> >>>>>> _______________________________________________
> >>>>>> AMBER mailing list
> >>>>>> AMBER.ambermd.org
> >>>>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>>>>
> >>>>> _______________________________________________
> >>>>> AMBER mailing list
> >>>>> AMBER.ambermd.org
> >>>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>> _______________________________________________
> >>>> AMBER mailing list
> >>>> AMBER.ambermd.org
> >>>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>>
> >>> _______________________________________________
> >>> AMBER mailing list
> >>> AMBER.ambermd.org
> >>> http://lists.ambermd.org/mailman/listinfo/amber
> >>>
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 06 2017 - 00:30:03 PDT
