Try it and see!
On 7/6/17 12:18 AM, Rana Rehan Khalid wrote:
> i delete amber 16 then install and it ends with this is it fine
>
> make[2]: Leaving directory '/home/rehan/Downloads/amber16/AmberTools/src'
>
> Installation of AmberTools17 serial is complete at Thu Jul 6 03:16:30 EDT
> 2017.
>
> make[1]: Leaving directory '/home/rehan/Downloads/amber16/AmberTools/src'
> ==============================================================
> /home/rehan/Downloads/amber16/src/Makefile not found, or -noamber was set.
> This is expected if you do not have Amber16.
>
> On Thu, Jul 6, 2017 at 2:50 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> I would delete everything and start over.
>>
>> Bill
>>
>>
>> On 7/5/17 11:41 PM, Rana Rehan Khalid wrote:
>>> i follow the amber tutorial 2017 for installation i also have amber 16
>>> install and on the same directory i extract the amber 17 which i think
>>> extract on the same amber 16 directory configure gnu on ubuntu 16.1
>>>
>>> On Thu, Jul 6, 2017 at 2:37 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>
>>>> What configure instructions did you use? On what operating system?
>>>>
>>>> Bill
>>>>
>>>>
>>>> On 7/5/17 11:35 PM, Rana Rehan Khalid wrote:
>>>>> nergy_Sander.cpp: In member function ‘void
>>>>> Energy_Sander::SetDefaultInput()’:
>>>>> Energy_Sander.cpp:128:10: error: ‘struct sander_input’ has no member
>>>> named
>>>>> ‘ibelly’
>>>>> input_.ibelly = 0;
>>>>> ^
>>>>> Energy_Sander.cpp:131:10: error: ‘struct sander_input’ has no member
>>>> named
>>>>> ‘bellymask’
>>>>> input_.bellymask[0] = '\0';
>>>>> ^
>>>>> Energy_Sander.cpp:132:10: error: ‘struct sander_input’ has no member
>>>> named
>>>>> ‘refc’
>>>>> input_.refc[0] = '\0';
>>>>> ^
>>>>> <builtin>: recipe for target 'Energy_Sander.o' failed
>>>>> make[4]: *** [Energy_Sander.o] Error 1
>>>>> make[4]: Leaving directory
>>>>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj/src'
>>>>> Makefile:10: recipe for target 'install' failed
>>>>> make[3]: *** [install] Error 2
>>>>> make[3]: Leaving directory
>>>>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj'
>>>>> Makefile:482: recipe for target 'build_cpptraj' failed
>>>>> make[2]: *** [build_cpptraj] Error 2
>>>>> make[2]: Leaving directory '/home/rehan/Downloads/
>>>> amber16/AmberTools/src'
>>>>> Makefile:17: recipe for target 'serial' failed
>>>>> make[1]: *** [serial] Error 2
>>>>> make[1]: Leaving directory '/home/rehan/Downloads/
>>>> amber16/AmberTools/src'
>>>>> Makefile:7: recipe for target 'install' failed
>>>>> make: *** [install] Error 2
>>>>>
>>>>> On Thu, Jul 6, 2017 at 2:33 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>>>
>>>>>> Look at test output for problems, rather than compile warnings.
>>>>>>
>>>>>> Bill
>>>>>>
>>>>>>
>>>>>> On 7/5/17 11:31 PM, Rana Rehan Khalid wrote:
>>>>>>> is the warning messages during installation common or there is some
>>>>>> problem
>>>>>>> in installation ??
>>>>>>>
>>>>>>> On Thu, Jul 6, 2017 at 1:34 AM, Hai Nguyen <nhai.qn.gmail.com>
>> wrote:
>>>>>>>> Have you read the amber 17 manual about install yet? If yes, which
>>>> part
>>>>>> you
>>>>>>>> are not clear?
>>>>>>>>
>>>>>>>> Hai
>>>>>>>>
>>>>>>>> On Thu, Jul 6, 2017 at 1:22 AM Rana Rehan Khalid <
>> rrkhalid.umich.edu>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> is it better i delete the first one and install new one??
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Jul 6, 2017 at 1:11 AM, Bill Ross <ross.cgl.ucsf.edu>
>> wrote:
>>>>>>>>>> Install side-by-side, unless you want to debug deeply, is my
>>>>>>>> suggestion.
>>>>>>>>>> Bill
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On 7/5/17 10:09 PM, Rana Rehan Khalid wrote:
>>>>>>>>>>> I already Have Amber 16 but now i want to install amber 17 over
>> it
>>>>>>>>> kindly
>>>>>>>>>>> guide me i download the amber 17
>>>>>>>>>>>
>>>>>>>>>>> i also try to update the amber 16 but may be some file missing
>>>> after
>>>>>>>>>> update
>>>>>>>>>>> kindly guide me thanks
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Received on Thu Jul 06 2017 - 01:00:03 PDT
