I would delete everything and start over.
Bill
On 7/5/17 11:41 PM, Rana Rehan Khalid wrote:
> i follow the amber tutorial 2017 for installation i also have amber 16
> install and on the same directory i extract the amber 17 which i think
> extract on the same amber 16 directory configure gnu on ubuntu 16.1
>
> On Thu, Jul 6, 2017 at 2:37 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> What configure instructions did you use? On what operating system?
>>
>> Bill
>>
>>
>> On 7/5/17 11:35 PM, Rana Rehan Khalid wrote:
>>> nergy_Sander.cpp: In member function ‘void
>>> Energy_Sander::SetDefaultInput()’:
>>> Energy_Sander.cpp:128:10: error: ‘struct sander_input’ has no member
>> named
>>> ‘ibelly’
>>> input_.ibelly = 0;
>>> ^
>>> Energy_Sander.cpp:131:10: error: ‘struct sander_input’ has no member
>> named
>>> ‘bellymask’
>>> input_.bellymask[0] = '\0';
>>> ^
>>> Energy_Sander.cpp:132:10: error: ‘struct sander_input’ has no member
>> named
>>> ‘refc’
>>> input_.refc[0] = '\0';
>>> ^
>>> <builtin>: recipe for target 'Energy_Sander.o' failed
>>> make[4]: *** [Energy_Sander.o] Error 1
>>> make[4]: Leaving directory
>>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj/src'
>>> Makefile:10: recipe for target 'install' failed
>>> make[3]: *** [install] Error 2
>>> make[3]: Leaving directory
>>> '/home/rehan/Downloads/amber16/AmberTools/src/cpptraj'
>>> Makefile:482: recipe for target 'build_cpptraj' failed
>>> make[2]: *** [build_cpptraj] Error 2
>>> make[2]: Leaving directory '/home/rehan/Downloads/
>> amber16/AmberTools/src'
>>> Makefile:17: recipe for target 'serial' failed
>>> make[1]: *** [serial] Error 2
>>> make[1]: Leaving directory '/home/rehan/Downloads/
>> amber16/AmberTools/src'
>>> Makefile:7: recipe for target 'install' failed
>>> make: *** [install] Error 2
>>>
>>> On Thu, Jul 6, 2017 at 2:33 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>
>>>> Look at test output for problems, rather than compile warnings.
>>>>
>>>> Bill
>>>>
>>>>
>>>> On 7/5/17 11:31 PM, Rana Rehan Khalid wrote:
>>>>> is the warning messages during installation common or there is some
>>>> problem
>>>>> in installation ??
>>>>>
>>>>> On Thu, Jul 6, 2017 at 1:34 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>>>>>
>>>>>> Have you read the amber 17 manual about install yet? If yes, which
>> part
>>>> you
>>>>>> are not clear?
>>>>>>
>>>>>> Hai
>>>>>>
>>>>>> On Thu, Jul 6, 2017 at 1:22 AM Rana Rehan Khalid <rrkhalid.umich.edu>
>>>>>> wrote:
>>>>>>
>>>>>>> is it better i delete the first one and install new one??
>>>>>>>
>>>>>>>
>>>>>>> On Thu, Jul 6, 2017 at 1:11 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>>>>>
>>>>>>>> Install side-by-side, unless you want to debug deeply, is my
>>>>>> suggestion.
>>>>>>>> Bill
>>>>>>>>
>>>>>>>>
>>>>>>>> On 7/5/17 10:09 PM, Rana Rehan Khalid wrote:
>>>>>>>>> I already Have Amber 16 but now i want to install amber 17 over it
>>>>>>> kindly
>>>>>>>>> guide me i download the amber 17
>>>>>>>>>
>>>>>>>>> i also try to update the amber 16 but may be some file missing
>> after
>>>>>>>> update
>>>>>>>>> kindly guide me thanks
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Received on Thu Jul 06 2017 - 00:00:05 PDT
