Re: [AMBER] RNA parameters for wc_helix

From: David Case <david.case.rutgers.edu>
Date: Mon, 12 Jun 2017 20:12:47 -0400

On Mon, Jun 12, 2017, Supriyo Naskar wrote:

> So, If I use use wc_helix() to build a dna or rna and then I
> use helixanal(), I should get the helical parameters I used in wc_helix().
> I have used "float xoff"=2.25 and "inclination" = -4.96 in my code but I
> got different output when I calculate these values using helixanal().

OK...sounds like I was wrong. I suspect that the coordinate system used
in helixanal() is not the same as in wc_helix(). Sounds like an interesting
problem, assuming (as before) that being able to use wc_helix() represents
a real "win".

....dac


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Received on Mon Jun 12 2017 - 17:30:03 PDT
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