Re: [AMBER] RNA parameters for wc_helix

From: Supriyo Naskar <supriyo199331.gmail.com>
Date: Tue, 13 Jun 2017 12:43:25 +0530

Then ​what should I give as input in place of "float xoff" and "float incl
" ?

On Tue, Jun 13, 2017 at 5:42 AM, David Case <david.case.rutgers.edu> wrote:

> On Mon, Jun 12, 2017, Supriyo Naskar wrote:
>
> > So, If I use use wc_helix() to build a dna or rna and then I
> > use helixanal(), I should get the helical parameters I used in
> wc_helix().
> > I have used "float xoff"=2.25 and "inclination" = -4.96 in my code but I
> > got different output when I calculate these values using helixanal().
>
> OK...sounds like I was wrong. I suspect that the coordinate system used
> in helixanal() is not the same as in wc_helix(). Sounds like an
> interesting
> problem, assuming (as before) that being able to use wc_helix() represents
> a real "win".
>
> ....dac
>
>
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-- 
--------------------------------------------
Regards,
Supriyo Naskar
PhD Student, Department of Physics,
Indian Institute of Science, Bangalore.
---------------------------------------------
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Received on Tue Jun 13 2017 - 00:30:02 PDT
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