On Tue, Jun 13, 2017, Yue Qian wrote:
>
> I have a question regarding the neutral N-terminal proline: I could not find
> the corresponding parameter in the current amber protein force field, ie.
> ff14SB. All I can find is the NPRO which is the protonated form of N-ter
> proline. Has the nonprotonated version been developed in AMBER? How can I
> get access to it if any? Thank you very much!
Sorry...I thought this question had been answered on the mailing list, but
I guess not.
I'm not aware of any neutral N-terminal proline residues in Amber protein
libraries (or indeed, of any residues). Maybe someone on the list will know
something more.
...regards...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jun 13 2017 - 07:30:02 PDT
