Re: [AMBER] RNA parameters for wc_helix

From: Supriyo Naskar <supriyo199331.gmail.com>
Date: Mon, 12 Jun 2017 19:40:02 +0530

So, If I use use wc_helix() to build a dna or rna and then I
use helixanal(), I should get the helical parameters I used in wc_helix().
I have used "float xoff"=2.25 and "inclination" = -4.96 in my code but I
got different output when I calculate these values using helixanal().

I am attaching my code and output here. Please have a look ....

On Mon, Jun 12, 2017 at 5:08 PM, David Case <david.case.rutgers.edu> wrote:

> On Mon, Jun 12, 2017, Supriyo Naskar wrote:
>
> > Can anyone tell me what are the parameters should I give in the wc_helix
> > command to build ARNA.
>
> Use the fd_helix() routine to build various forms of RNA and DNA. If that
> is all you want, fine. If you really need the wc_helix-like parameters,
> take the fd_helix() structure and call helixanal() -- I think(!) that will
> give you the information you need to feed into wc_helix().
>
> ...good luck....dac
>
>
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-- 
--------------------------------------------
Regards,
Supriyo Naskar
PhD Student, Department of Physics,
Indian Institute of Science, Bangalore.
---------------------------------------------




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Received on Mon Jun 12 2017 - 07:30:02 PDT
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