Re: [AMBER] [MTKPP & pmemd error]: Installation of Amber 12 with Amber-too13 on Fedora25-64bit

From: Vasantha Kumar <vin.vasanth.gmail.com>
Date: Mon, 20 Mar 2017 11:49:48 -0400

Dear Bill

Thank you so much for your suggestions and kind help, I could finally
install ambertoo16.

Have a good day/night

With many thanks
Vince

On Sat, Mar 18, 2017 at 2:55 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:

> Why not try the latest Amber Tools version? The old ones couldn't
> foresee modern configurations.
>
> Bill
>
>
> On 3/17/17 11:33 PM, Vasantha Kumar wrote:
> > Dear Amber-list
> >
> > I m trying to install Amber12 with Amber-tool13 on a Fedora 25 64bit
> laptop
> > with intel support. I can run ./configure gnu, everything goes well, but
> > when I run "make install or make -j install" it shows an error with
> mtkpp.
> > I have tried to run "./configure -nomtkpp gnu" still I have the same
> > problem. When I run make test it launches the test and it fails to
> perform
> > full comparison of files. Therefore could any one suggest me troubleshoot
> > this issue. I highly appreciate your time and suggestions.
> >
> > With best wishes
> > Vince
> >
> >
> > Error after running make install
> > _________________________________
> >
> > cd AmberTools/src && make install
> > make[1]: Entering directory '/home/J55/Programs/amber12/AmberTools/src'
> > Starting installation of MTK++ at Sat Mar 18 02:04:15 EDT 2017.
> > (cd mtkpp && make && make -j 1 install )
> > make[2]: Entering directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp'
> > make all-recursive
> > make[3]: Entering directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp'
> > Making all in src
> > make[4]: Entering directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp/src'
> > Making all in Diagnostics
> > make[5]: Entering directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp/src/Diagnostics'
> > /bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I.
> > -I../.. -I/home/J55/Programs/amber12/AmberTools/src/boost-1.38.0 -I./..
> > -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT
> > MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c -o MTKException.lo
> > MTKException.cpp
> > libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../..
> > -I/home/J55/Programs/amber12/AmberTools/src/boost-1.38.0 -I./.. -DNDEBUG
> > -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT
> > MTKException.lo -MD -MP -MF .deps/MTKException.Tpo -c MTKException.cpp -o
> > MTKException.o
> > Makefile:339: recipe for target 'MTKException.lo' failed
> > make[5]: Leaving directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp/src/Diagnostics'
> > Makefile:282: recipe for target 'all-recursive' failed
> > make[4]: Leaving directory
> > '/home/J55/Programs/amber12/AmberTools/src/mtkpp/src'
> > Makefile:389: recipe for target 'all-recursive' failed
> > make[3]: Leaving directory '/home/J55/Programs/amber12/
> AmberTools/src/mtkpp'
> > Makefile:298: recipe for target 'all' failed
> > make[2]: Leaving directory '/home/J55/Programs/amber12/
> AmberTools/src/mtkpp'
> > Makefile:106: recipe for target 'install_mtkpp' failed
> > make[1]: Leaving directory '/home/J55/Programs/amber12/AmberTools/src'
> > Makefile:7: recipe for target 'install' failed
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Received on Mon Mar 20 2017 - 09:00:04 PDT
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