hi,
AmberTools16 does not have pmemd (and pmemd.cuda GPU).
Hai
On Mon, Mar 20, 2017 at 11:38 AM, Vasantha Kumar <vin.vasanth.gmail.com>
wrote:
> Dear Hai
>
> Good morning...
>
> Thank you so much for your suggestions and links,
> with the getopts.patch amber16 installation went well.
>
> I have one more question, Initially I had both aber12 and amberTool13, due
> to series of problems during installation on 64bit Bill suggested me to
> install amber16, now I have installed only amberTool16, therefore my
> question is, in the absence of amber16 and only ambertool16 installation
> would have all the features of amber16 or some features are going to be not
> accessible or missed due to the unavailability of amber16.?
>
> Thank you so much fro your kind help...
>
> Have a good day/night
> With many thanks
> Vasanth
>
> On Sun, Mar 19, 2017 at 2:19 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
>> On Sat, Mar 18, 2017 at 10:19 PM, Vasantha Kumar <vin.vasanth.gmail.com>
>> wrote:
>>
>> > Dear Bill
>> >
>> > I have also tried to install amber 16, everything runs wells, in the
>> end I
>> > have following error related to "libsrim" with the make install.
>> Therefore
>> > I would highly appreciate your suggestion and comments related to with
>> this
>> > issue.
>> >
>> > With many thanks
>> > Vince
>> >
>> > Error in installing amber 16
>> > ===================
>> >
>> >
>>
>> > depend:169: recipe for target 'getopts_c.o' failed
>> >
>>
>> Can you try to follow this this thread:
>>
>> http://archive.ambermd.org/201612/0124.html
>>
>> (search for "text/plain attachment: getopts.patch
>> <http://archive.ambermd.org/201612/att-0124/getopts.patch>" in that
>> thread)
>>
>>
>> Hai
>>
>>
>> > make[3]: *** [getopts_c.o] Error 1
>> > make[3]: Leaving directory '/home/J55/Programs/amber16/
>> > AmberTools/src/rism'
>> > Makefile:475: recipe for target 'librism' failed
>> > make[2]: *** [librism] Error 2
>> > make[2]: Leaving directory
>> > '/home/J55/Programs/amber16/AmberTools/src/sander'
>> > Makefile:17: recipe for target 'serial' failed
>> > make[1]: *** [serial] Error 2
>> > make[1]: Leaving directory '/home/J55/Programs/amber16/AmberTools/src'
>> > Makefile:7: recipe for target 'install' failed
>> > make: *** [install] Error 2
>> >
>> >
>> >
>> >
>> > On Sat, Mar 18, 2017 at 10:12 PM, Vasantha Kumar <vin.vasanth.gmail.com
>> >
>> > wrote:
>> >
>> > > Dear David
>> > >
>> > > I have tried to comment the mtkpp in makefile.. it works but in the
>> end
>> > it
>> > > shows problem with "chamber". If I disable chamber again it will give
>> > error
>> > > with "reduce". I don't know what's going on. Its same software which
>> > worked
>> > > well on 32bit computer. Is there is a way to check necessary library
>> > > requirement is matched or not tun run Amber.
>> > >
>> > > Thanks
>> > > Vince
>> > >
>> > >
>> > > On Sat, Mar 18, 2017 at 11:22 AM, David Case <david.case.rutgers.edu>
>> > > wrote:
>> > >
>> > >> On Sat, Mar 18, 2017, Vasantha Kumar wrote:
>> > >> >
>> > >> > I m trying to install Amber12 with Amber-tool13 on a Fedora 25
>> 64bit
>> > >> laptop
>> > >> > with intel support. I can run ./configure gnu, everything goes
>> well,
>> > but
>> > >> > when I run "make install or make -j install" it shows an error with
>> > >> mtkpp.
>> > >>
>> > >> > I have tried to run "./configure -nomtkpp gnu" still I have the
>> same
>> > >> > problem.
>> > >>
>> > >> This is odd. Look carefully at the output from configure -nomtkpp.
>> The
>> > >> point
>> > >> of the -nomtkpp is to skip the mtkpp step. An alternative is to edit
>> > >> $AMBERHOME/AmberTools/src/Makefile, and comment out the line that
>> > >> compiles
>> > >> mtkpp.
>> > >>
>> > >> ....good luck....dac
>> > >>
>> > >>
>> > >> _______________________________________________
>> > >> AMBER mailing list
>> > >> AMBER.ambermd.org
>> > >> http://lists.ambermd.org/mailman/listinfo/amber
>> > >>
>> > >
>> > >
>> > _______________________________________________
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>> >
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>
>
>
> --
>
> *Vasantha Kumar M. V.*
> Postdoctoral Researcher
>
> *Dr. Ioannis Gelis group*
> Department of Chemistry
> University of South Florida
> 4202 E. Fowler Avenue, CHE 205
> Tampa, FL 33620-5250
>
> Email: vasanthakuma.mail.usf.edu <vin.vasanth.gmail.com> or
> vin.vasanth.gmail.com
> Cell phone: +1 813 203 9660 <(813)%20203-9660>
>
>
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Received on Mon Mar 20 2017 - 09:00:03 PDT
