Re: [AMBER] Protein path error

From: Elvis Martis <elvis_bcp.elvismartis.in>
Date: Tue, 22 Nov 2016 16:01:01 +0530

Hello Arthi,
I am sorry, I couldn't find any on Youtube.

Regards

*Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
[image: photo] Email: elvis_bcp.elvismartis.in <elvis_bcp.elvismartis.in>
Website: http://www.elvismartis.in <http://www.elvismartis.in/>
group website: http://www.profeccoutinho.net.in/
Address:

 Kalina, Santa Cruz [E]
​, Mumbai, 400 098, INDIA​

Alt. e-mail: emartis12.live.com
<https://in.linkedin.com/in/elvisadrianmartis>


On 22 November 2016 at 15:53, Arthi Venkat <arthivenkat2.gmail.com> wrote:

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>
> Dear sir,
>
> Thank you. Is there any amber video tutorial for better understanding.
>
>
>
>
>
>
>
>
>
>
>
>
> Regards,
>
> Arthi Venkatesan
> Research Associate,
> School of Bio-Sciences and Technology (SBST),
> VIT University, Vellore - 632014,
> TamilNadu, India.
>
> On Tue, Nov 22, 2016 at 3:38 PM, Elvis Martis <elvis_bcp.elvismartis.in>
> wrote:
>
> > Hi,
> > Your command to load pdb is incorrect
> > <NAME>=loadpdb </PATH/<potein_name>.pdb>
> >
> > Regards
> >
> > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > [image: photo] Email: elvis_bcp.elvismartis.in <elvis_bcp.elvismartis.in
> >
> > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > group website: http://www.profeccoutinho.net.in/
> > Address:
> > ​
> > Kalina, Santa Cruz [E]
> > ​, Mumbai, 400 098, INDIA​
> >
> > Alt. e-mail: emartis12.live.com
> > <https://in.linkedin.com/in/elvisadrianmartis>
> >
> >
> > On 22 November 2016 at 15:22, Arthi Venkat <arthivenkat2.gmail.com>
> wrote:
> >
> > > [image: Boxbe] <https://www.boxbe.com/overview> This message is
> eligible
> > > for Automatic Cleanup! (arthivenkat2.gmail.com) Add cleanup rule
> > > <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.
> > com%2Fcleanup%3Fkey%3DSIicN4EQawEM1Uf45UzjigLU91HW
> > f%252F0ZRdDlKlmOLoE%253D%26token%3DQ%252FyA6vAWXomxsTOYZYYFPe6dq03t
> > 98D67dp5tqvu1WKaJ484RIzU7VagFMJYKy12ywEDnOSHY1g6I6FUnDe0ispy
> > X1cX18ovvpWaXh1Q9VUM2EBfv0bNFnz0oxsBDLTp36iTEw1GyJt%
> > 252FkRKegHOM4g%253D%253D&tc_serial=27687288940&tc_rand=
> > 1658448027&utm_source=stf&utm_medium=email&utm_campaign=
> > ANNO_CLEANUP_ADD&utm_content=001>
> > > | More info
> > > <http://blog.boxbe.com/general/boxbe-automatic-
> > cleanup?tc_serial=27687288940&tc_rand=1658448027&utm_source=
> > stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> > >
> > > Dear sir,
> > >
> > > I am new to amber simulation, I am trying to learn basics from amber
> > > tutorial. when I started with the basic tutorial, i am unable to load
> my
> > > protein. Can anyone send me the video tutorial for better
> understanding.
> > I
> > > have attached my error along with this mail.
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > > Regards,
> > >
> > > Arthi Venkatesan
> > > Research Associate,
> > > School of Bio-Sciences and Technology (SBST),
> > > VIT University, Vellore - 632014,
> > > TamilNadu, India.
> > >
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Received on Tue Nov 22 2016 - 03:00:03 PST
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