Re: [AMBER] Protein path error

From: Arthi Venkat <arthivenkat2.gmail.com>
Date: Tue, 22 Nov 2016 16:28:02 +0530

Hello sir,

Is there any other amber tutorial link available for better understanding.












Regards,

Arthi Venkatesan
Research Associate,
School of Bio-Sciences and Technology (SBST),
VIT University, Vellore - 632014,
TamilNadu, India.

On Tue, Nov 22, 2016 at 4:01 PM, Elvis Martis <elvis_bcp.elvismartis.in>
wrote:

> Hello Arthi,
> I am sorry, I couldn't find any on Youtube.
>
> Regards
>
> *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> [image: photo] Email: elvis_bcp.elvismartis.in <elvis_bcp.elvismartis.in>
> Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> group website: http://www.profeccoutinho.net.in/
> Address:
> ​
> Kalina, Santa Cruz [E]
> ​, Mumbai, 400 098, INDIA​
>
> Alt. e-mail: emartis12.live.com
> <https://in.linkedin.com/in/elvisadrianmartis>
>
>
> On 22 November 2016 at 15:53, Arthi Venkat <arthivenkat2.gmail.com> wrote:
>
> > [image: Boxbe] <https://www.boxbe.com/overview> This message is eligible
> > for Automatic Cleanup! (arthivenkat2.gmail.com) Add cleanup rule
> > <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.
> com%2Fcleanup%3Fkey%3Dfech%252B%252FyQVxiAX21mfNzvwIcROsjtOyZv
> nxsymVPNEYc%253D%26token%3Dfa2%252BVdhXsWwWmRTYbjNwjzharv8ikZ
> IHO6iVxYqXyyZtLmARyyOj8mNWO0q6TEEys886EtzLCrkKwoTdIO0F2u9j%
> 252FTuW5nH7TMN5FhFiSqSVSKHawe3%252F5qHxWXFlm8nGAiYOiRuiLvDq0x
> q7bveJHw%253D%253D&tc_serial=27687681340&tc_rand=
> 1527147392&utm_source=stf&utm_medium=email&utm_campaign=
> ANNO_CLEANUP_ADD&utm_content=001>
> > | More info
> > <http://blog.boxbe.com/general/boxbe-automatic-
> cleanup?tc_serial=27687681340&tc_rand=1527147392&utm_source=
> stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> >
> > Dear sir,
> >
> > Thank you. Is there any amber video tutorial for better understanding.
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> > Regards,
> >
> > Arthi Venkatesan
> > Research Associate,
> > School of Bio-Sciences and Technology (SBST),
> > VIT University, Vellore - 632014,
> > TamilNadu, India.
> >
> > On Tue, Nov 22, 2016 at 3:38 PM, Elvis Martis <elvis_bcp.elvismartis.in>
> > wrote:
> >
> > > Hi,
> > > Your command to load pdb is incorrect
> > > <NAME>=loadpdb </PATH/<potein_name>.pdb>
> > >
> > > Regards
> > >
> > > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > > [image: photo] Email: elvis_bcp.elvismartis.in <
> elvis_bcp.elvismartis.in
> > >
> > > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > > group website: http://www.profeccoutinho.net.in/
> > > Address:
> > > ​
> > > Kalina, Santa Cruz [E]
> > > ​, Mumbai, 400 098, INDIA​
> > >
> > > Alt. e-mail: emartis12.live.com
> > > <https://in.linkedin.com/in/elvisadrianmartis>
> > >
> > >
> > > On 22 November 2016 at 15:22, Arthi Venkat <arthivenkat2.gmail.com>
> > wrote:
> > >
> > > > [image: Boxbe] <https://www.boxbe.com/overview> This message is
> > eligible
> > > > for Automatic Cleanup! (arthivenkat2.gmail.com) Add cleanup rule
> > > > <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.
> > > com%2Fcleanup%3Fkey%3DSIicN4EQawEM1Uf45UzjigLU91HW
> > > f%252F0ZRdDlKlmOLoE%253D%26token%3DQ%252FyA6vAWXomxsTOYZYYFPe6dq03t
> > > 98D67dp5tqvu1WKaJ484RIzU7VagFMJYKy12ywEDnOSHY1g6I6FUnDe0ispy
> > > X1cX18ovvpWaXh1Q9VUM2EBfv0bNFnz0oxsBDLTp36iTEw1GyJt%
> > > 252FkRKegHOM4g%253D%253D&tc_serial=27687288940&tc_rand=
> > > 1658448027&utm_source=stf&utm_medium=email&utm_campaign=
> > > ANNO_CLEANUP_ADD&utm_content=001>
> > > > | More info
> > > > <http://blog.boxbe.com/general/boxbe-automatic-
> > > cleanup?tc_serial=27687288940&tc_rand=1658448027&utm_source=
> > > stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> > > >
> > > > Dear sir,
> > > >
> > > > I am new to amber simulation, I am trying to learn basics from amber
> > > > tutorial. when I started with the basic tutorial, i am unable to load
> > my
> > > > protein. Can anyone send me the video tutorial for better
> > understanding.
> > > I
> > > > have attached my error along with this mail.
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > Regards,
> > > >
> > > > Arthi Venkatesan
> > > > Research Associate,
> > > > School of Bio-Sciences and Technology (SBST),
> > > > VIT University, Vellore - 632014,
> > > > TamilNadu, India.
> > > >
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Received on Tue Nov 22 2016 - 03:00:05 PST
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