Do your residue names and atom names agree between the PDB and the force
field?
Please send errors in context of output for better guesses.
Bill
On 10/26/16 11:33 PM, Mahrukh Imtiaz wrote:
> Hi all,
> I have been working on simulations of transmembrane proteins. However, I am facing a little problem while generation of parameter files of lipid in xleap i.e. when I upload the pdb file after loading the lipid14 forcefield, it gives error of "no atom types defined" in lipid. Although I have thoroughly matched all atom types defined in my lipid pdb with the default defined by xleap and there is no difference. I was unable to configure the reason behind this error. Any help is highly appreciated.
> Waiting for your kind response.
> Best Regards,Mahrukh ImtiazCOMSATS Institute of Information TechnologyIslamabad.
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Received on Thu Oct 27 2016 - 02:00:02 PDT
