I think you can go ahead recompiling amber and reruning the test.
Hai
On Mon, Oct 17, 2016 at 9:44 PM, jacky zhao <jackyzhao010.gmail.com> wrote:
> Hi everyone,
>
> When I am updating amber16 and ambertools in my workstation, I come
> across the error. The information was attached below:
>
>
> Thank you for taking your time.
>
>
> [user.localhost amber16]$ ./update_amber --update
>
> Preparing to apply updates... please wait.
>
> Applying AmberTools 16/update.1
>
> Applying AmberTools 16/update.2
>
> Applying AmberTools 16/update.3
>
> Applying AmberTools 16/update.4
>
> Applying AmberTools 16/update.5
>
> Applying AmberTools 16/update.6
>
> Applying AmberTools 16/update.7
>
> Applying AmberTools 16/update.8
>
> Applying AmberTools 16/update.9
>
> /home/user/amber16/updateutils/patch.py:298: PatchingWarning: Previously
> applied patch detected. Skipping.
>
> PatchingWarning)
>
> /home/user/amber16/updateutils/patch.py:334: PatchingWarning: Permissions
> not found for every file in
> .patches/AmberTools16_Unapplied_Patches/update.9. All new files will be
> read-only!
>
> 'files will be read-only!') % self.name, PatchingWarning)
>
> Applying AmberTools 16/update.10
>
> Applying AmberTools 16/update.11
>
> Applying AmberTools 16/update.12
>
> Applying AmberTools 16/update.13
>
> Applying AmberTools 16/update.14
>
> Applying AmberTools 16/update.15
>
> Applying Amber 16/update.1
>
> Applying Amber 16/update.2
>
> Applying Amber 16/update.3
>
> Applying Amber 16/update.4
>
> /home/user/amber16/updateutils/patch.py:334: PatchingWarning: Permissions
> not found for every file in .patches/Amber16_Unapplied_Patches/update.4.
> All new files will be read-only!
>
> 'files will be read-only!') % self.name, PatchingWarning)
>
> Applying Amber 16/update.5
>
>
> NOTE: update_amber only updates the raw source code! You must recompile if
> you want
>
> any changes to take effect!
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Received on Mon Oct 17 2016 - 20:00:02 PDT
