Thank you very much for your help.
I have compiled and installed amber16, and have passed the test.
Finished serial test suite for Amber 16 at Tue Oct 18 17:54:51 CST 2016.
make[1]: Leaving directory `/home/user/amber16/test'
150 file comparisons passed
0 file comparisons failed
0 tests experienced errors
Test log file saved as
/home/user/amber16/logs/test_amber_serial/2016-10-18_17-48-27.log
No test diffs to save!
2016-10-18 10:42 GMT+08:00 Hai Nguyen <nhai.qn.gmail.com>:
> I think you can go ahead recompiling amber and reruning the test.
>
> Hai
>
> On Mon, Oct 17, 2016 at 9:44 PM, jacky zhao <jackyzhao010.gmail.com>
> wrote:
>
> > Hi everyone,
> >
> > When I am updating amber16 and ambertools in my workstation, I come
> > across the error. The information was attached below:
> >
> >
> > Thank you for taking your time.
> >
> >
> > [user.localhost amber16]$ ./update_amber --update
> >
> > Preparing to apply updates... please wait.
> >
> > Applying AmberTools 16/update.1
> >
> > Applying AmberTools 16/update.2
> >
> > Applying AmberTools 16/update.3
> >
> > Applying AmberTools 16/update.4
> >
> > Applying AmberTools 16/update.5
> >
> > Applying AmberTools 16/update.6
> >
> > Applying AmberTools 16/update.7
> >
> > Applying AmberTools 16/update.8
> >
> > Applying AmberTools 16/update.9
> >
> > /home/user/amber16/updateutils/patch.py:298: PatchingWarning: Previously
> > applied patch detected. Skipping.
> >
> > PatchingWarning)
> >
> > /home/user/amber16/updateutils/patch.py:334: PatchingWarning:
> Permissions
> > not found for every file in
> > .patches/AmberTools16_Unapplied_Patches/update.9. All new files will be
> > read-only!
> >
> > 'files will be read-only!') % self.name, PatchingWarning)
> >
> > Applying AmberTools 16/update.10
> >
> > Applying AmberTools 16/update.11
> >
> > Applying AmberTools 16/update.12
> >
> > Applying AmberTools 16/update.13
> >
> > Applying AmberTools 16/update.14
> >
> > Applying AmberTools 16/update.15
> >
> > Applying Amber 16/update.1
> >
> > Applying Amber 16/update.2
> >
> > Applying Amber 16/update.3
> >
> > Applying Amber 16/update.4
> >
> > /home/user/amber16/updateutils/patch.py:334: PatchingWarning:
> Permissions
> > not found for every file in .patches/Amber16_Unapplied_Patches/update.4.
> > All new files will be read-only!
> >
> > 'files will be read-only!') % self.name, PatchingWarning)
> >
> > Applying Amber 16/update.5
> >
> >
> > NOTE: update_amber only updates the raw source code! You must recompile
> if
> > you want
> >
> > any changes to take effect!
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Lei Zhao, Ph.D.
International Joint Cancer Institute of the Second Military Medical
University
National Engineering Research Center for Antibody Medicine
New Library Building 11th floor,800 Xiang Yin Road
Shanghai 200433
P.R.China
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Oct 18 2016 - 03:30:03 PDT
