Hi Dan (and Devs),
I'm running into a problem compiling amber on MSU HPCC. I googled and
found that you had helped someone with nearly the exact same error two
years ago, so I tried your solution with soft-links:
http://archive.ambermd.org/201405/0396.html
However, this still did not work. I notice that, prior to the time at
which I get the error the other user reported, there was another failure
relating to Fortran compiler version identification. (The issue in 2014 did
not appear to be prefaced by this.)
>>>
Checking for updates...
Checking for available patches online. This may take a few seconds...
Available AmberTools 17 patches:
No patches available
Available Amber 17 patches:
No patches available
Using the AmberTools miniconda installation in
/home/cerutti/amber//miniconda
version 2.7.12
Obtaining the intel compiler suite versions, e.g.:
/opt/software/ClusterStudio/2016.3/bin/icc -v
The C version is 16.0.3
sed: -e expression #1, char 8: unknown option to `s'
The Fortran version is
./configure2: line 1384: [: : integer expression expected
./configure2: line 1385: [: : integer expression expected
./configure2: line 1462: [: : integer expression expected
./configure2: line 1543: [: : integer expression expected
Testing the /opt/software/ClusterStudio/2016.3/bin/icc compiler:
...
<<<
Notice the references to ./configure2; I'm looking around for where that
script might have been placed so that I can see what's happening around
those lines, but I don't see it. Can you point out where this might be?
There are a lot of issues with the modules system and platform-specific
settings on our HPCC machines, but this may lead us to some more general
ways to shore up the compilation.
Thanks,
Dave
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Received on Thu Sep 01 2016 - 14:00:02 PDT
