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-- Jason M. Swails > On Sep 1, 2016, at 4:45 PM, David Cerutti <dscerutti.gmail.com> wrote: > > Hi Dan (and Devs), > > I'm running into a problem compiling amber on MSU HPCC. I googled and > found that you had helped someone with nearly the exact same error two > years ago, so I tried your solution with soft-links: > > http://archive.ambermd.org/201405/0396.html > > However, this still did not work. I notice that, prior to the time at > which I get the error the other user reported, there was another failure > relating to Fortran compiler version identification. (The issue in 2014 did > not appear to be prefaced by this.) > > Checking for updates... > Checking for available patches online. This may take a few seconds... > > Available AmberTools 17 patches: > > No patches available > > Available Amber 17 patches: > > No patches available > > Using the AmberTools miniconda installation in > /home/cerutti/amber//miniconda > version 2.7.12 > > Obtaining the intel compiler suite versions, e.g.: > /opt/software/ClusterStudio/2016.3/bin/icc -v > The C version is 16.0.3 > sed: -e expression #1, char 8: unknown option to `s' > The Fortran version is > ./configure2: line 1384: [: : integer expression expected > ./configure2: line 1385: [: : integer expression expected > ./configure2: line 1462: [: : integer expression expected > ./configure2: line 1543: [: : integer expression expected > > Testing the /opt/software/ClusterStudio/2016.3/bin/icc compiler: > ... > <<< > > Notice the references to ./configure2; I'm looking around for where that > script might have been placed so that I can see what's happening around > those lines, but I don't see it. Can you point out where this might be? > There are a lot of issues with the modules system and platform-specific > settings on our HPCC machines, but this may lead us to some more general > ways to shore up the compilation. > > Thanks, > > Dave > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Thu Sep 01 2016 - 18:00:03 PDT