[AMBER] antechamber cannot match patching atoms of amino acid

From: Chitrak Gupta <chgupta.mix.wvu.edu>
Date: Wed, 10 Aug 2016 18:26:24 -0400

Hi,

I am trying to parameterize a novel amino acid, to be used as a part of a
peptide.

I tried using antechamber, but the program could not match the patching
atoms. Is antechamber only for organic molecules, i.e. should I be using
something else for parameterizine amino acids? Or is there a way to get
anterchamber to match the patching atoms?


Regards,
Chitrak.
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Received on Wed Aug 10 2016 - 15:30:02 PDT