Re: [AMBER] antechamber cannot match patching atoms of amino acid

From: FyD <>
Date: Fri, 12 Aug 2016 10:12:01 +0200

Dear Chitrak,

> I am trying to parameterize a novel amino acid, to be used as a part of a
> peptide.
> I tried using antechamber, but the program could not match the patching
> atoms. Is antechamber only for organic molecules, i.e. should I be using
> something else for parameterizine amino acids? Or is there a way to get
> anterchamber to match the patching atoms?

this is likely you want to generate a molecular fragment for this
modified amino-acid...

I would use R.E.D. Server Dev./PyRED at


regards, Francois

           F.-Y. Dupradeau

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Received on Fri Aug 12 2016 - 01:30:02 PDT
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