Hi,
there was a similiar solved issue:
http://archive.ambermd.org/201406/0215.html
can you try to follow and let us know if this help?
cheers
Hai
On Mon, May 9, 2016 at 11:39 AM, 유효정 <yhj2236.naver.com> wrote:
> Dear AMBER users,
>
>
>
> I tried to install Amber12 with AmberTools12, but I got the error message.
>
> My linux version is CentOS release 6.3.
>
>
>
> # set environment variable in .cshrc
>
> setenv LD_LIBRARY_PATH /usr/lib:/BiO/apps/cuda/lib
>
> setenv LD_LIBRARY64_PATH /usr/lib64:/BiO/apps/cuda/lib64
>
> setenv AMBERHOME /home/myhome/amber12
>
>
>
> # unzip install files
>
> tar xvfj AmberTools12.tar.bz2
>
> tar xvfj Amber12.tar.bz2
>
>
>
> # install some compilers and other libraries
>
> sudo yum install gcc flex tcsh zlib-devel bzip2-devel \libXt-devel libXext-
> devel libXdmcp-devel
>
>
>
> # ./configure gnu
>
>
>
> #make install
>
> Error message is appeared at the end of the make install.
>
>
>
> ===================================
>
>
>
> FileIO_Gzip.o: In function `FileIO_Gzip::Seek(long)':
>
> FileIO_Gzip.cpp:(.text+0x6b): undefined reference to `gzseek64'
>
> FileIO_Gzip.o: In function `FileIO_Gzip::Open(char const*, char const*)':
>
> FileIO_Gzip.cpp:(.text+0x1fb): undefined reference to `gzopen64'
>
> FileIO_Gzip.o: In function `FileIO_Gzip::Tell()':
>
> FileIO_Gzip.cpp:(.text+0x35): undefined reference to `gztell64'
>
> collect2: ld returned 1 exit status
>
> make[3]: *** [cpptraj] Error 1
>
> make[3]: Leaving directory
> `/home/yhj2236/amber12/AmberTools/src/cpptraj/src'
>
> make[2]: *** [install] Error 2
>
> make[2]: Leaving directory `/home/yhj2236/amber12/AmberTools/src/cpptraj'
>
> make[1]: *** [serial] Error 2
>
> make[1]: Leaving directory `/home/yhj2236/amber12/AmberTools/src'
>
> make: *** [install] Error 2
>
>
>
> After make install,
>
> How do I check that AMBER is correctly installed?
>
> All files are executable file in $AMBERHOME/bin?
>
>
>
> Thanks for the all advises.
>
>
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon May 09 2016 - 10:00:04 PDT
