Dear AMBER users,
I tried to install Amber12 with AmberTools12, but I got the error message.
My linux version is CentOS release 6.3.
# set environment variable in .cshrc
setenv LD_LIBRARY_PATH /usr/lib:/BiO/apps/cuda/lib
setenv LD_LIBRARY64_PATH /usr/lib64:/BiO/apps/cuda/lib64
setenv AMBERHOME /home/myhome/amber12
# unzip install files
tar xvfj AmberTools12.tar.bz2
tar xvfj Amber12.tar.bz2
# install some compilers and other libraries
sudo yum install gcc flex tcsh zlib-devel bzip2-devel \libXt-devel libXext-
devel libXdmcp-devel
# ./configure gnu
#make install
Error message is appeared at the end of the make install.
===================================
FileIO_Gzip.o: In function `FileIO_Gzip::Seek(long)':
FileIO_Gzip.cpp:(.text+0x6b): undefined reference to `gzseek64'
FileIO_Gzip.o: In function `FileIO_Gzip::Open(char const*, char const*)':
FileIO_Gzip.cpp:(.text+0x1fb): undefined reference to `gzopen64'
FileIO_Gzip.o: In function `FileIO_Gzip::Tell()':
FileIO_Gzip.cpp:(.text+0x35): undefined reference to `gztell64'
collect2: ld returned 1 exit status
make[3]: *** [cpptraj] Error 1
make[3]: Leaving directory
`/home/yhj2236/amber12/AmberTools/src/cpptraj/src'
make[2]: *** [install] Error 2
make[2]: Leaving directory `/home/yhj2236/amber12/AmberTools/src/cpptraj'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/yhj2236/amber12/AmberTools/src'
make: *** [install] Error 2
After make install,
How do I check that AMBER is correctly installed?
All files are executable file in $AMBERHOME/bin?
Thanks for the all advises.
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Received on Mon May 09 2016 - 09:00:02 PDT
