[AMBER] Amber12 install error

From: 유효정 <yhj2236.naver.com>
Date: Tue, 10 May 2016 00:39:11 +0900

Dear AMBER users,


I tried to install Amber12 with AmberTools12, but I got the error message.

My linux version is CentOS release 6.3.


# set environment variable in .cshrc

setenv LD_LIBRARY_PATH /usr/lib:/BiO/apps/cuda/lib

setenv LD_LIBRARY64_PATH /usr/lib64:/BiO/apps/cuda/lib64

setenv AMBERHOME /home/myhome/amber12


# unzip install files

tar xvfj AmberTools12.tar.bz2

tar xvfj Amber12.tar.bz2


# install some compilers and other libraries

sudo yum install gcc flex tcsh zlib-devel bzip2-devel \libXt-devel libXext-
devel libXdmcp-devel


# ./configure gnu


#make install

Error message is appeared at the end of the make install.




FileIO_Gzip.o: In function `FileIO_Gzip::Seek(long)':

FileIO_Gzip.cpp:(.text+0x6b): undefined reference to `gzseek64'

FileIO_Gzip.o: In function `FileIO_Gzip::Open(char const*, char const*)':

FileIO_Gzip.cpp:(.text+0x1fb): undefined reference to `gzopen64'

FileIO_Gzip.o: In function `FileIO_Gzip::Tell()':

FileIO_Gzip.cpp:(.text+0x35): undefined reference to `gztell64'

collect2: ld returned 1 exit status

make[3]: *** [cpptraj] Error 1

make[3]: Leaving directory

make[2]: *** [install] Error 2

make[2]: Leaving directory `/home/yhj2236/amber12/AmberTools/src/cpptraj'

make[1]: *** [serial] Error 2

make[1]: Leaving directory `/home/yhj2236/amber12/AmberTools/src'

make: *** [install] Error 2


After make install,

How do I check that AMBER is correctly installed?

All files are executable file in $AMBERHOME/bin?


Thanks for the all advises.


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Received on Mon May 09 2016 - 09:00:02 PDT
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