Re: [AMBER] build a phosphorylated protein structure pdb file

From: YanhuaOuyang <15901283893.163.com>
Date: Tue, 5 Apr 2016 09:04:40 +0800

I have the pdb file just has Ser and Thr I want to change them to make them
phosphorylated.
> 在 2016年4月4日,下午6:10,Carlos Simmerling <carlos.simmerling.gmail.com> 写道:
>
> It's not clear what you are trying to do. Are you saying that the pdb file
> just has Ser and Thr and you want to change them to make them
> phosphorylated? Or are you asking how to get parameters?
> On Apr 4, 2016 3:21 AM, "YanhuaOuyang" <15901283893.163.com> wrote:
>
>> Hi, I am preparing pdb file of a protein which is phosphorylated at Serine
>> and Threonine. I first do a phosphorylated protein, so I don’t know how to
>> build my phosphorylated protein structure pdb file. Is it build using
>> softwares, then which one? What the detailed steps of building such a pdb
>> file? How to add a phosphate group in the pdb file?
>>
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>>
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Received on Mon Apr 04 2016 - 18:30:03 PDT
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