In fact, I just have a fasta file of the protein sequence, I just don’t know how to convert the peptide sequence to a pdb file of a protein which is phosphorylated at Serine and Threonine. Can you tell me the detailed steps.
>
>>> and Threonine
> 在 2016年4月5日，上午9:04，YanhuaOuyang <15901283893.163.com> 写道：
>
> I have the pdb file just has Ser and Thr I want to change them to make them
> phosphorylated.
>> 在 2016年4月4日，下午6:10，Carlos Simmerling <carlos.simmerling.gmail.com> 写道：
>>
>> It's not clear what you are trying to do. Are you saying that the pdb file
>> just has Ser and Thr and you want to change them to make them
>> phosphorylated? Or are you asking how to get parameters?
>> On Apr 4, 2016 3:21 AM, "YanhuaOuyang" <15901283893.163.com> wrote:
>>
>>> Hi, I am preparing pdb file of a protein which is phosphorylated at Serine
>>> and Threonine. I first do a phosphorylated protein, so I don’t know how to
>>> build my phosphorylated protein structure pdb file. Is it build using
>>> softwares, then which one? What the detailed steps of building such a pdb
>>> file? How to add a phosphate group in the pdb file?
>>>
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Received on Mon Apr 04 2016 - 18:30:04 PDT
