Re: [AMBER] build a phosphorylated protein structure pdb file

From: Carlos Simmerling <carlos.simmerling.gmail.com>
Date: Mon, 4 Apr 2016 06:10:17 -0400

It's not clear what you are trying to do. Are you saying that the pdb file
just has Ser and Thr and you want to change them to make them
phosphorylated? Or are you asking how to get parameters?
On Apr 4, 2016 3:21 AM, "YanhuaOuyang" <15901283893.163.com> wrote:

> Hi, I am preparing pdb file of a protein which is phosphorylated at Serine
> and Threonine. I first do a phosphorylated protein, so I don’t know how to
> build my phosphorylated protein structure pdb file. Is it build using
> softwares, then which one? What the detailed steps of building such a pdb
> file? How to add a phosphate group in the pdb file?
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Apr 04 2016 - 03:30:04 PDT
Custom Search