Hi,
Try using cpptraj to convert the restart - it may provide a more
informative error message if something is wrong with the file:
parm m1_watoct.prmtop
trajin hold1.rst
trajout hold1.pdb
Hope this helps,
-Dan
On Wed, Mar 9, 2016 at 8:41 PM, Bin Wang <ben.wangbj.gmail.com> wrote:
> Sorry please see this one.
> [01292016]$ /opt/amber14/bin/ambpdb -p m1_watoct.prmtop < hold1.rst >
> hold1.pdb
> | ambpdb (C++) Version V15.00
> | Reading Amber restart from STDIN
> Error: Could not read restart atoms/time.
>
>
> On Wed, Mar 9, 2016 at 10:25 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> Please copy/paste your command line and result.
>>
>> Thanks,
>> Bill
>>
>> On 3/9/16 7:07 PM, Bin Wang wrote:
>> > Dear Amber users,
>> >
>> > I am running the 'hold" step in the lipid bilayer simulation. After this
>> > run was finished, I try to use ambpdb to check the result, but I got a
>> > error message: "Error: Could not read restart atoms/time." The hold.out
>> > file looks ok, but I can not get the pdb file, and cannot see the
>> > trajectories using VMD. Could anybody let me know what went wrong? Thank
>> > you in advance.
>> >
>> >
>> > Best,
>> >
>> > Bin
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>>
>>
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
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http://home.chpc.utah.edu/~cheatham/
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Received on Wed Mar 09 2016 - 21:00:04 PST
