On Wed, Mar 09, 2016, Dan Roe wrote:
>
> Try using cpptraj to convert the restart ....
Note that Bin is already using the cpptraj code:
> > [01292016]$ /opt/amber14/bin/ambpdb -p m1_watoct.prmtop < hold1.rst >
> > hold1.pdb
> > | ambpdb (C++) Version V15.00
> > | Reading Amber restart from STDIN
My guess(?) is that hold1.rst is a binary restart, and one has to use the -c
option rather than redirection from stdin:
ambpdb -p m1_watoct.prmtop -c hold1.rst > hold1.pdb
Worth a try, anyway.
...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 10 2016 - 04:30:03 PST
