Hi Wang
Are you using binary restart file? If it is binary then Ambpdb doesn't
work for binary restart files. It will be better to use cpptraj to get pdb
file from binary restart files.
On 10 Mar 2016 05:41, "Bin Wang" <ben.wangbj.gmail.com> wrote:
> Sorry please see this one.
> [01292016]$ /opt/amber14/bin/ambpdb -p m1_watoct.prmtop < hold1.rst >
> hold1.pdb
> | ambpdb (C++) Version V15.00
> | Reading Amber restart from STDIN
> Error: Could not read restart atoms/time.
>
>
> On Wed, Mar 9, 2016 at 10:25 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
> > Please copy/paste your command line and result.
> >
> > Thanks,
> > Bill
> >
> > On 3/9/16 7:07 PM, Bin Wang wrote:
> > > Dear Amber users,
> > >
> > > I am running the 'hold" step in the lipid bilayer simulation. After
> this
> > > run was finished, I try to use ambpdb to check the result, but I got a
> > > error message: "Error: Could not read restart atoms/time." The hold.out
> > > file looks ok, but I can not get the pdb file, and cannot see the
> > > trajectories using VMD. Could anybody let me know what went wrong?
> Thank
> > > you in advance.
> > >
> > >
> > > Best,
> > >
> > > Bin
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Received on Wed Mar 09 2016 - 21:00:03 PST
