Re: [AMBER] PLUMED patching with AMBER

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 12 Nov 2015 07:55:53 -0500

I don't think any patching is required for using Plumed with AmberTools 15, right?

All the best,
Jason

--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
> On Nov 12, 2015, at 7:09 AM, Giovanni Bussi <giovanni.bussi.gmail.com> wrote:
> 
> You have to use
> 
> plumed patch --shared -p
> 
> On Thu, Nov 12, 2015 at 11:40 AM, Sanjib Paul <sanjib88paul.gmail.com>
> wrote:
> 
>> Hello Giovanni,
>>                     Sorry for late reply. I tried with the command you
>> suggested me. This time nothing has happened. The message I am getting like
>> following.
>> 
>> $* plumed patch --shared*
>> *plumed: /lib64/libz.so.1: no version information available (required by
>> plumed)*
>> *Nothing to do. -h for help*
>> 
>> I got the message "*plumed: /lib64/libz.so.1: no version information
>> available (required by plumed)*" also when I tried to patch by "plumed
>> patch -p". But then patching has been done. This time nothing is happening.
>> Any further suggestion will be precious to me.
>> 
>> Thanking you.
>> Sanjib
>> 
>> On Mon, Nov 9, 2015 at 12:44 PM, Giovanni Bussi <giovanni.bussi.gmail.com>
>> wrote:
>> 
>>> Hi,
>>> 
>>> can you try to patch using
>>> plumed patch --shared
>>> ?
>>> 
>>> This should be more robust against missing C++ libraries in the linker.
>>> 
>>> Let me know if this works.
>>> 
>>> Giovanni
>>> 
>>> 
>>> On Mon, Nov 9, 2015 at 6:24 AM, Sanjib Paul <sanjib88paul.gmail.com>
>>> wrote:
>>> 
>>>> Hello everyone,
>>>>                      I have AMBER14 installed in my machine. Then I
>> have
>>>> installed PLUMED and patched it with AMBER. According to PLUMED
>>>> installation procedure I had to recompile and re-install AMBER. Now I
>>>> recompiled it but could not install. Installation process stopped
>> giving
>>>> some error messages. I have attached a image file of terminal showing
>>> error
>>>> messages.  I tried to patch with mpi version of sander.
>>>>                      I don't know whether it is appropriate place to
>> ask
>>>> this question or not. But I am going through this problem form last few
>>>> days. So, I had to ask. I will be very grateful if someone give me any
>>>> suggestion to get out of this problem.
>>>> 
>>>> Thanking you.
>>>> Sanjib
>>>> 
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Received on Thu Nov 12 2015 - 05:00:06 PST
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