I don't think any patching is required for using Plumed with AmberTools 15, right?
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
> On Nov 12, 2015, at 7:09 AM, Giovanni Bussi <giovanni.bussi.gmail.com> wrote:
>
> You have to use
>
> plumed patch --shared -p
>
> On Thu, Nov 12, 2015 at 11:40 AM, Sanjib Paul <sanjib88paul.gmail.com>
> wrote:
>
>> Hello Giovanni,
>> Sorry for late reply. I tried with the command you
>> suggested me. This time nothing has happened. The message I am getting like
>> following.
>>
>> $* plumed patch --shared*
>> *plumed: /lib64/libz.so.1: no version information available (required by
>> plumed)*
>> *Nothing to do. -h for help*
>>
>> I got the message "*plumed: /lib64/libz.so.1: no version information
>> available (required by plumed)*" also when I tried to patch by "plumed
>> patch -p". But then patching has been done. This time nothing is happening.
>> Any further suggestion will be precious to me.
>>
>> Thanking you.
>> Sanjib
>>
>> On Mon, Nov 9, 2015 at 12:44 PM, Giovanni Bussi <giovanni.bussi.gmail.com>
>> wrote:
>>
>>> Hi,
>>>
>>> can you try to patch using
>>> plumed patch --shared
>>> ?
>>>
>>> This should be more robust against missing C++ libraries in the linker.
>>>
>>> Let me know if this works.
>>>
>>> Giovanni
>>>
>>>
>>> On Mon, Nov 9, 2015 at 6:24 AM, Sanjib Paul <sanjib88paul.gmail.com>
>>> wrote:
>>>
>>>> Hello everyone,
>>>> I have AMBER14 installed in my machine. Then I
>> have
>>>> installed PLUMED and patched it with AMBER. According to PLUMED
>>>> installation procedure I had to recompile and re-install AMBER. Now I
>>>> recompiled it but could not install. Installation process stopped
>> giving
>>>> some error messages. I have attached a image file of terminal showing
>>> error
>>>> messages. I tried to patch with mpi version of sander.
>>>> I don't know whether it is appropriate place to
>> ask
>>>> this question or not. But I am going through this problem form last few
>>>> days. So, I had to ask. I will be very grateful if someone give me any
>>>> suggestion to get out of this problem.
>>>>
>>>> Thanking you.
>>>> Sanjib
>>>>
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Received on Thu Nov 12 2015 - 05:00:06 PST