Jason, you are right.
Ambertools 15 comes pre-patched with plumed, with a procedure that is
equivalent to doing:
plumed patch --runtime -p
However, as far as I understood Sanjib is using Amber 14.
Giovanni
On Thu, Nov 12, 2015 at 1:55 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> I don't think any patching is required for using Plumed with AmberTools
> 15, right?
>
> All the best,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
> > On Nov 12, 2015, at 7:09 AM, Giovanni Bussi <giovanni.bussi.gmail.com>
> wrote:
> >
> > You have to use
> >
> > plumed patch --shared -p
> >
> > On Thu, Nov 12, 2015 at 11:40 AM, Sanjib Paul <sanjib88paul.gmail.com>
> > wrote:
> >
> >> Hello Giovanni,
> >> Sorry for late reply. I tried with the command you
> >> suggested me. This time nothing has happened. The message I am getting
> like
> >> following.
> >>
> >> $* plumed patch --shared*
> >> *plumed: /lib64/libz.so.1: no version information available (required by
> >> plumed)*
> >> *Nothing to do. -h for help*
> >>
> >> I got the message "*plumed: /lib64/libz.so.1: no version information
> >> available (required by plumed)*" also when I tried to patch by "plumed
> >> patch -p". But then patching has been done. This time nothing is
> happening.
> >> Any further suggestion will be precious to me.
> >>
> >> Thanking you.
> >> Sanjib
> >>
> >> On Mon, Nov 9, 2015 at 12:44 PM, Giovanni Bussi <
> giovanni.bussi.gmail.com>
> >> wrote:
> >>
> >>> Hi,
> >>>
> >>> can you try to patch using
> >>> plumed patch --shared
> >>> ?
> >>>
> >>> This should be more robust against missing C++ libraries in the linker.
> >>>
> >>> Let me know if this works.
> >>>
> >>> Giovanni
> >>>
> >>>
> >>> On Mon, Nov 9, 2015 at 6:24 AM, Sanjib Paul <sanjib88paul.gmail.com>
> >>> wrote:
> >>>
> >>>> Hello everyone,
> >>>> I have AMBER14 installed in my machine. Then I
> >> have
> >>>> installed PLUMED and patched it with AMBER. According to PLUMED
> >>>> installation procedure I had to recompile and re-install AMBER. Now I
> >>>> recompiled it but could not install. Installation process stopped
> >> giving
> >>>> some error messages. I have attached a image file of terminal showing
> >>> error
> >>>> messages. I tried to patch with mpi version of sander.
> >>>> I don't know whether it is appropriate place to
> >> ask
> >>>> this question or not. But I am going through this problem form last
> few
> >>>> days. So, I had to ask. I will be very grateful if someone give me any
> >>>> suggestion to get out of this problem.
> >>>>
> >>>> Thanking you.
> >>>> Sanjib
> >>>>
> >>>> _______________________________________________
> >>>> AMBER mailing list
> >>>> AMBER.ambermd.org
> >>>> http://lists.ambermd.org/mailman/listinfo/amber
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Received on Thu Nov 12 2015 - 09:00:03 PST
