The box_molecule vmd script draws a box around the provided pdb. Basically
gets the min/max coordinates and draws a box made of sticks (cylinders).
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/box_molecule/
Put the script in the same folder as your pdb, open the pdb in vmd, open
the command line, execute "source box_molecule.tcl", and execute
"box_molecule top".
Best,
------------------------------------------------------
Dr. Matej Repic
Ecole Polytechnique Fédérale de Lausanne
Laboratory of Computational Chemistry and Biochemistry
SB - ISIC LCBC
BCH 4108
CH - 1015 Lausanne
------------------------------------------------------
On 8/31/15, 20:56, "Iqbal, Muhammad Sajid" <iqbal.uleth.ca> wrote:
>Hello Amber community,
>
>How I could draw 3D cube around the molecules as PDB formate. I know the
>dimensions of the cube. Any program reccomendation would be great help.
>Thank you a lot in advance.
>
>Sajid
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Received on Mon Aug 31 2015 - 16:00:03 PDT
