Re: [AMBER] Draw a cube around the molecules

From: Repic Matej <>
Date: Mon, 31 Aug 2015 22:46:32 +0000

The box_molecule vmd script draws a box around the provided pdb. Basically
gets the min/max coordinates and draws a box made of sticks (cylinders).

Put the script in the same folder as your pdb, open the pdb in vmd, open
the command line, execute "source box_molecule.tcl", and execute
"box_molecule top".


Dr. Matej Repic
Ecole Polytechnique Fédérale de Lausanne
Laboratory of Computational Chemistry and Biochemistry
BCH 4108
CH - 1015 Lausanne

On 8/31/15, 20:56, "Iqbal, Muhammad Sajid" <> wrote:

>Hello Amber community,
>How I could draw 3D cube around the molecules as PDB formate. I know the
>dimensions of the cube. Any program reccomendation would be great help.
>Thank you a lot in advance.
>AMBER mailing list

AMBER mailing list
Received on Mon Aug 31 2015 - 16:00:03 PDT
Custom Search