Hi all,
I am trying to upgrade AT from 14 to 15 on our servers with
CentOS 6.6 .
These are the commands I executed (as root) within $AMBERHOME
(that is /usr/local/amber14):
*./update_amber --upgrade./configure gnumake -j 16 install*
but I got the following error(s):
*/usr/bin/ld: /usr/local/amber14/lib/libnetcdff.a(fort-attio.o): relocation
R_X86_64_PC32 against undefined symbol `strlen@@GLIBC_2.2.5' can not be
used when making a shared object; recompile with -fPIC/usr/bin/ld: final
link failed: Bad valuecollect2: ld returned 1 exit statusmake[2]: ***
[/usr/local/amber14/lib/libsander.so] Error 1make[2]: Leaving directory
`/usr/local/amber14/AmberTools/src/sander'make[1]: *** [serial] Error
2make[1]: Leaving directory `/usr/local/amber14/AmberTools/src'make: ***
[install] Error 2*
Should I probably completely remove AT14 and install AT15 from scratch
(as I have never had installation/compilation problems over the last 2 years
on the same servers)?
Thanks in advance for any suggestion!
--
Dr Massimiliano Porrini
BiophyMS Team
U869 ARNA - Inserm / Bordeaux University
Institut Européen de Chimie et Biologie (IECB)
2, rue Robert Escarpit
33607 Pessac Cedex
FRANCE
Tel : 33 (0)5 40 00 63 31
http://www.iecb.u-bordeaux.fr/teams/GABELICA
Emails: massimiliano.porrini.inserm.fr
m.porrini.iecb.u-bordeaux.fr
mozz76.gmail.com
massimiliano.porrini.u-bordeaux.fr
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Aug 18 2015 - 10:00:03 PDT
