Hi;
When I neutralize my solvate box ( with addionsrand command: "addIonsRand mol CL 0") then try to get the topology and coordinate files with saveamberparm command, I receive this error:> saveamberparm mol topol.top coor.crd
Checking Unit.
Building topology.
Building atom parameters.
For atom: .R<CL 8306>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8307>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8308>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8309>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8310>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8311>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
For atom: .R<CL 8312>.A<CL 1> Could not find vdW (or other) parameters for type: Cl-
Parameter file was not saved. I don't know what to do?
Thank you much, Mohammad.
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Received on Mon Aug 17 2015 - 07:30:03 PDT
