'source leaprc.ff14SB' will load protein 14SB ff + DNA bsc0 + RNA chiOL3.
You can try can look at the log file from tleap.
But I admit that using `ff14SB` name is a bit confusing.
Hai
On Wed, Aug 5, 2015 at 3:35 AM, Pragya Priyadarshini <pragya.imtech.res.in>
wrote:
>
>
> Dear Amber users,
>
> I have to do MD simulation of protein-DNA complex, earlier I have used
> ff99SB + bsc0 force field of AMBER11, now I have to use AMBER 14 for my
> study. For protein, it is mentioned in AMBER14 manual, to use ff14SB but
> I am not getting about DNA. Is ff14SB, sufficient for DNA of protein-DNA
> complex or I have to other force field.
>
> Please suggest me.
>
> Regards
>
> --
> Pragya Priyadarshini
>
> C/o Dr. Balvinder Singh
> Bioinformatics Center (G N R P C)
> Institute of Microbial Technology-CSIR
> Sector 39A, Chandigarh-160036, INDIA
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 05 2015 - 06:00:13 PDT
