[AMBER] Regarding DNA forcefield in Amber14

From: Pragya Priyadarshini <pragya.imtech.res.in>
Date: Wed, 05 Aug 2015 13:05:34 +0530


Dear Amber users,

I have to do MD simulation of protein-DNA complex, earlier I have used
ff99SB + bsc0 force field of AMBER11, now I have to use AMBER 14 for my
study. For protein, it is mentioned in AMBER14 manual, to use ff14SB but
I am not getting about DNA. Is ff14SB, sufficient for DNA of protein-DNA
complex or I have to other force field.

Please suggest me.


Pragya Priyadarshini
C/o Dr. Balvinder Singh
Bioinformatics Center (G N R P C)
Institute of Microbial Technology-CSIR
Sector 39A, Chandigarh-160036, INDIA
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Received on Wed Aug 05 2015 - 01:00:02 PDT
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