[AMBER] Problem in loading the pdb file

From: Harshala Haldankar <harshala7h.gmail.com>
Date: Thu, 9 Jul 2015 16:28:07 +0530


I am doing lipid bilayer simulation (POPG/POPE) on my peptide (18-mer)
using AMBER14.

I am following An Amber Lipid Force Field Tutorial: Lipid14 Edition

According to the tutorial, I had used charmm gui to build the
protein/membrane system. After downloading the pdb at step5 from charmm
gui, I converted the pdb file from charmm to amber using
charmmlipid2amber.py script. Now when I try to Ioad the converted pdb using
loadpdb command in xleap, I am getting "name change in pdb file residue"
(snapshot attached) warning and the xleap window automatically shuts down.

Can anybody please help me to solve this error.

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Received on Thu Jul 09 2015 - 04:00:03 PDT
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