On Thu, Jul 9, 2015 at 6:58 AM, Harshala Haldankar <harshala7h.gmail.com>
wrote:
> Hi,
>
> I am doing lipid bilayer simulation (POPG/POPE) on my peptide (18-mer)
> using AMBER14.
>
> I am following An Amber Lipid Force Field Tutorial: Lipid14 Edition
>
> According to the tutorial, I had used charmm gui to build the
> protein/membrane system. After downloading the pdb at step5 from charmm
> gui, I converted the pdb file from charmm to amber using
> charmmlipid2amber.py script. Now when I try to Ioad the converted pdb using
> loadpdb command in xleap, I am getting "name change in pdb file residue"
> (snapshot attached) warning and the xleap window automatically shuts down.
>
> Can anybody please help me to solve this error.
>
​What you showed are warnings, not errors (and they are expected warnings,
as well).
Unless there is a different error, this does not mean there is a problem.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Jul 09 2015 - 05:30:03 PDT
