Re: [AMBER] Problem in loading the pdb file

From: Harshala Haldankar <>
Date: Fri, 10 Jul 2015 10:09:03 +0530


Thank you Jason for your reply...

I know its just a warning, but why does my xleap window shuts down
automatically? It loads my pdb for few seconds and later Xleap window

Harshala Haldankar

On Thu, Jul 9, 2015 at 4:28 PM, Harshala Haldankar <>

> Hi,
> I am doing lipid bilayer simulation (POPG/POPE) on my peptide (18-mer)
> using AMBER14.
> I am following An Amber Lipid Force Field Tutorial: Lipid14 Edition
> According to the tutorial, I had used charmm gui to build the
> protein/membrane system. After downloading the pdb at step5 from charmm
> gui, I converted the pdb file from charmm to amber using
> script. Now when I try to Ioad the converted pdb using
> loadpdb command in xleap, I am getting "name change in pdb file residue"
> (snapshot attached) warning and the xleap window automatically shuts down.
> Can anybody please help me to solve this error.
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Received on Thu Jul 09 2015 - 22:00:03 PDT
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