On Mon, 2014-04-21 at 14:37 +0400, James Starlight wrote:
> also I've forced with the below error during compilation of the amber
> without cuda using gcc 4.7 (all the required packages listed in manual have
> been installed|)
>
> r14/lib/libemil.a -lstdc++ \
> ../sebomd/sebomd.a \
> ../lib/sys.a
> /home/own/Documents/simulations/amber/amber14/lib/libnetcdff.a
> /home/own/Documents/simulations/amber/amber14/lib/libnetcdf.a \
> -lrism -lfftw3 -larpack -llapack -lblas \
>
> /usr/bin/ld: cannot find -lstdc++
> collect2: error: ld returned 1 exit status
>
> How does it possible to install amber tools (in particular i need only for
> the lattest mmpbsa) in minimal set ?
We don't have enough information about your system to help here.
libstdc++ is a (very) common library that should be on (almost) every
system. My suspicion is that you do not have a C++ compiler installed.
Make sure you have installed all of the prerequisites for Amber first:
http://ambermd.org/ubuntu.html
Good luck,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Apr 21 2014 - 05:00:03 PDT
