Hi,
Thanks for your reply. I used "tar -xvjf" instead of "tar -xvf". Problem is
solved.
tar -xvjf AmberTools13.tar.bz2
tar -xvjf Amber12.tar.bz2
mv amber12 /home/ab/software
export AMBERHOME=/home/ab/software/amber12
cd /home/ab/software/amber12
./configure gnu
make install
2014-04-21 14:38 GMT+03:00 Jason Swails <jason.swails.gmail.com>:
> On Mon, 2014-04-21 at 13:43 +0300, Ahmet yıldırım wrote:
> > Hi,
> >
> > When I install Amber12 on Ubuntu 12.1, I get the following message. Could
> > anyone help?
> > ...
> > There are patches available. Do you want to apply them now? [y/n]
> > (Recommended Y)
> > y
> > Preparing to apply updates... please wait.
> > No new updates available for AmberTools 13
> > Applying Amber 12/bugfix.18.bz2
> > BadPatchError: Could not decompressing
> > .patches/Amber_Unapplied_Patches/bugfix.18.bz2 with bunzip2
> > Automatic patching failed! Check the errors before re-configuring
>
> Sounds like you don't have bunzip2. What does the command
>
> which bunzip2
>
> return? If it's not present, try running the command "sudo apt-get
> install bzip2"
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Ahmet Yıldırım
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Received on Mon Apr 21 2014 - 05:00:04 PDT
