Sorry. I get "Warning: AMBERHOME [None] differs from expected". What is the
problem?
2014-04-21 14:49 GMT+03:00 Ahmet yıldırım <ahmedo047.gmail.com>:
> Hi,
>
> Thanks for your reply. I used "tar -xvjf" instead of "tar -xvf". Problem
> is solved.
>
> tar -xvjf AmberTools13.tar.bz2
> tar -xvjf Amber12.tar.bz2
> mv amber12 /home/ab/software
> export AMBERHOME=/home/ab/software/amber12
> cd /home/ab/software/amber12
> ./configure gnu
> make install
>
>
>
> 2014-04-21 14:38 GMT+03:00 Jason Swails <jason.swails.gmail.com>:
>
> On Mon, 2014-04-21 at 13:43 +0300, Ahmet yıldırım wrote:
>> > Hi,
>> >
>> > When I install Amber12 on Ubuntu 12.1, I get the following message.
>> Could
>> > anyone help?
>> > ...
>> > There are patches available. Do you want to apply them now? [y/n]
>> > (Recommended Y)
>> > y
>> > Preparing to apply updates... please wait.
>> > No new updates available for AmberTools 13
>> > Applying Amber 12/bugfix.18.bz2
>> > BadPatchError: Could not decompressing
>> > .patches/Amber_Unapplied_Patches/bugfix.18.bz2 with bunzip2
>> > Automatic patching failed! Check the errors before re-configuring
>>
>> Sounds like you don't have bunzip2. What does the command
>>
>> which bunzip2
>>
>> return? If it's not present, try running the command "sudo apt-get
>> install bzip2"
>>
>> HTH,
>> Jason
>>
>> --
>> Jason M. Swails
>> BioMaPS,
>> Rutgers University
>> Postdoctoral Researcher
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> Ahmet Yıldırım
>
--
Ahmet Yıldırım
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Received on Mon Apr 21 2014 - 06:00:03 PDT
