also I've forced with the below error during compilation of the amber
without cuda using gcc 4.7 (all the required packages listed in manual have
been installed|)
r14/lib/libemil.a -lstdc++ \
../sebomd/sebomd.a \
../lib/sys.a
/home/own/Documents/simulations/amber/amber14/lib/libnetcdff.a
/home/own/Documents/simulations/amber/amber14/lib/libnetcdf.a \
-lrism -lfftw3 -larpack -llapack -lblas \
/usr/bin/ld: cannot find -lstdc++
collect2: error: ld returned 1 exit status
How does it possible to install amber tools (in particular i need only for
the lattest mmpbsa) in minimal set ?
Best,
James
2014-04-21 13:43 GMT+04:00 James Starlight <jmsstarlight.gmail.com>:
> Dear Amber tools!
>
> I've forced with the problem during compilation of the amber-14 with the
> CUDA support (I'm using cuda-5 with the GeForce GTX 670).
>
> Firstly I've successful run configure -cuda gnu with the detection of my
> cuda-5.0 dir
>
> on next step running make install I've obtained
>
> [sudo] password for own:
> cd AmberTools/src && make install
> make[1]: Entering directory
> `/home/own/Documents/simulations/amber/amber14/AmberTools/src'
> AmberTools14 has no CUDA-enabled components
> (cd ../../src && make cuda )
> make[2]: Entering directory
> `/home/own/Documents/simulations/amber/amber14/src'
> make[2]: *** No rule to make target `cuda'. Stop.
> make[2]: Leaving directory
> `/home/own/Documents/simulations/amber/amber14/src'
> make[1]: [cuda] Error 2 (ignored)
> make[1]: Leaving directory
> `/home/own/Documents/simulations/amber/amber14/AmberTools/src'
> ==============================================================
> /src/Makefile not found, or -noamber was set.
> This is expected if you do not have Amber14.
>
> How it could be fixed?
>
> James
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Apr 21 2014 - 04:00:02 PDT
