[AMBER] OSX Mavericks: Failure in parallel installation of Amber12

From: George Tzotzos <gtzotzos.me.com>
Date: Fri, 03 Jan 2014 12:13:18 +0100

I’m been trying to install Amber12 parallel in a brand new hard drive (no previous installations of any kind). The operating system is OSX 10.9.1

Previously (15/11/13) Julio Dominguez reported that the new Xcode comes without command line tools and that one would have to install these by typing: Xcode-select —install. This is correct and maybe Jason could make an addition on his wikidot page (http://jswails.wikidot.com/mac-os-x).

I also noticed that trying to install mpich by MacPorts (sudo port install mpich +gcc47) give the following error:

Error: org.macports.configure for port mpich returned: obsolete port
Please see the log file for port mpich for details:

The log file (see end of this message) indicates that mpich-default should be installed instead.

Thus, I run sudo port install mpich-default +gcc47. It run without problems producing the following output:

+--- MPICH Usage note ----
| The mpi[cc|cxx|f77|f90] weappers are installed as
| mpi[cc|cxx|f77|f90]-mp. To make mpich-default the default (i.e. the
| version you get when you run 'mpicc/mpicxx'), please run:
| sudo port select --set mpich mpich-mp-fortran

I did < sudo port select —set mpich mpich-mp-fortran > and followed with the command < sudo port select gcc mp-gcc47 > which succeeded and activated mp-gcc47

Parallel < make install > produced fatal errors (see below). Any help in troubleshooting this will be much appreciated
In file included from lmodC.c:17:
/opt/local/include/mpi.h:166:53: error: expected identifier
static const MPI_Datatype mpich_mpi_double_int MPICH_ATTR_TYPE_TAG_…

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Received on Fri Jan 03 2014 - 03:30:02 PST
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