Hi,
On Thu, Nov 7, 2013 at 5:52 AM, <sunita.tifrh.res.in> wrote:
> But now we are having problem while executing sander.MPI. It is given
> following error message.
>
>
> PML ob1 cannot be selected
> --------------------------------------------------------------------------
> No available pml components were found!
>
> This means that there are no components of this type installed on your
> system or all the components reported that they could not be used.
This is a problem with your MPI setup, not with sander.
> This is a fatal error; your MPI process is likely to abort. Check the
> output of the "ompi_info" command and ensure that components of this
This appears to be an OpenMPI-related output message, but you say you
are using mpich2. Make sure you have your system set up to use your
mpich2 installation (i.e. your PATH and LD_LIBRARY_PATH both contain
your mpich2 bin and lib directories respectively).
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu Nov 07 2013 - 08:00:03 PST
