Thanks Daniel,
It was the path problem. Finally I set path for openmpi. Now sander.MPI
is working.
Thank you.
Sunita
> Hi,
>
> On Thu, Nov 7, 2013 at 5:52 AM, <sunita.tifrh.res.in> wrote:
>> But now we are having problem while executing sander.MPI. It is given
>> following error message.
>>
>>
>> PML ob1 cannot be selected
>> --------------------------------------------------------------------------
>> No available pml components were found!
>>
>> This means that there are no components of this type installed on your
>> system or all the components reported that they could not be used.
>
> This is a problem with your MPI setup, not with sander.
>
>> This is a fatal error; your MPI process is likely to abort. Check the
>> output of the "ompi_info" command and ensure that components of this
>
> This appears to be an OpenMPI-related output message, but you say you
> are using mpich2. Make sure you have your system set up to use your
> mpich2 installation (i.e. your PATH and LD_LIBRARY_PATH both contain
> your mpich2 bin and lib directories respectively).
>
> -Dan
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
>
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Received on Fri Nov 08 2013 - 22:30:02 PST
