[AMBER] error while executing sander.MPI

From: <sunita.tifrh.res.in>
Date: Thu, 7 Nov 2013 18:22:36 +0530

Hi users,

I just recently installed AMBER12 on x86_64 GNU/Linux. I got problem while
installing sander.MPI. With openmpi we could not succeed. However with
mpich2 we could installed sander.MPI.

But now we are having problem while executing sander.MPI. It is given
following error message.

PML ob1 cannot be selected
No available pml components were found!

This means that there are no components of this type installed on your
system or all the components reported that they could not be used.

This is a fatal error; your MPI process is likely to abort. Check the
output of the "ompi_info" command and ensure that components of this
type are available on your system. You may also wish to check the
value of the "component_path" MCA parameter and ensure that it has at
least one directory that contains valid MCA components.

We set the path correctly for the lib files.

Please suggest how to rectify it.

Thank you.


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Received on Thu Nov 07 2013 - 05:00:04 PST
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