Dear David
Thanks for reply. I tried my file having xyz points like this:
./a.out < my.dat� > temp.txt
In tmp.txt I get some points which should be the points for placing the base pairs (please correct me if wrong). Further:
�
1) There are other two related programs (12 and 13). How do I input temp.txt points to program_12? and further to use program13 .
2) Where I can provide the desired sequence of DNA? getbase.nab seems to give random sequence if used with program_13 (nab program_13.nab getbase.nab)
3) Also I am curious:�
>> That said, I'm trying to get them updated to a more useable form
is it expected soon? approx. time. For me I think nab is somewhat difficult to start with.
Thanks and regards,
Jiomm
On Friday, October 25, 2013 12:50 AM, case <case.biomaps.rutgers.edu> wrote:
On Tue, Oct 22, 2013, Jio M wrote:
>
> program_11.nab spline.nab
>
./a.out
The program_11 requires an input file; if you just do the above, it will just
hang waiting for it.
>
> Also where I should define the new path points to wrap my DNA and the
> sequence for the same. I saw one file toto.dat in nab examples and I
> tried to visualize it and it looks like a spiral thing. Is this file an
> example for some program in nab?
You can use this file, e.g. a.out < toto.dat, but I think that tot.dat is
actually the output from some earlier run.� You can try to define various
paths (x,y,z on each line of an input file), and see what you get.
Unfortunately, time has degraded some of the NAB examples--now they are
more
templates for ideas about how to write NAB programs than they are useful
scripts per se.� That said, I'm trying to get them updated to a more useable
form.
...regards...dave case
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Received on Fri Oct 25 2013 - 07:30:03 PDT
