[AMBER] NAB : Orienting a molecule

From: HIMANSHU JOSHI <himanshuphy87.gmail.com>
Date: Sat, 5 Oct 2013 00:03:48 +0530

Dear friends,

I am trying to build a model with Nucleic acid where I would
like to align the molecule (say 12 mer dna) to a particular line .
I tried in xLeap but found it difficult to do, then I looked for a NAB
module. Here also I couldn't find a way to align the entire molecule
to a line. I went through NAB direction in Ambertools manual (Program 3 )
but couldn't resolve it.

Kindly help me to get away from it

Thanks in advance.

*With Regards,
Graduate Scholar, Center for Condense Matter Theory
Department of Physics IISc.,Bangalore India 560012*
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Received on Fri Oct 04 2013 - 12:00:04 PDT
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