Dear Himanshu,
I'm not sure to follow you, but you should take a look on the Tutorial B1 at Amber Tutorials website (
http://ambermd.org/tutorials/)
Best,
Aldo
=======================================
Aldo Segura-Cabrera
Postdoctoral Fellow
Division of Experimental Hematology and Cancer Biology
Cancer and Blood Diseases Institute
Cincinnati Children's Hospital Medical Center
3333 Burnet Ave, MLC 7013, Cincinnati OH 45229
e-mail: Aldo.Segura-Cabrera.cchmc.org; aldosegura.gmail.com
=========================================
________________________________
De: HIMANSHU JOSHI <himanshuphy87.gmail.com>
Para: AMBER Mailing List <amber.ambermd.org>
Enviado: Viernes, 4 de octubre, 2013 14:33:48
Asunto: [AMBER] NAB : Orienting a molecule
Dear friends,
I am trying to build a model with Nucleic acid where I would
like to align the molecule (say 12 mer dna) to a particular line .
I tried in xLeap but found it difficult to do, then I looked for a NAB
module. Here also I couldn't find a way to align the entire molecule
to a line. I went through NAB direction in Ambertools manual (Program 3 )
but couldn't resolve it.
Kindly help me to get away from it
Thanks in advance.
--
*With Regards,
HIMANSHU JOSHI
Graduate Scholar, Center for Condense Matter Theory
Department of Physics IISc.,Bangalore India 560012*
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Received on Fri Oct 04 2013 - 13:00:07 PDT
